Research Article
Gene Selection and Classification of scRNA-seq Data Combining Information Gain Ratio and Genetic Algorithm with Dynamic Crossover
Table 3
NMI metric obtained by the IGRDCGA and several competing algorithms.
| Dataset | K means | Spectral | SIMLR | IGRDCGA | PCA | tSNE |
| Allodiploid | 0.3793 | 0.0778 | 1.0000 | 1.0000 | 1.0000 | 0.0490 | Sasagawa | 0.3048 | 0.1815 | 0.4665 | 0.9128 | 0.6349 | 0.0903 | Ramskold | 0.6868 | 0.4946 | 0.7594 | 0.9709 | 0.9394 | 0.3444 | Biase | 0.6690 | 0.5114 | 0.8321 | 1.0000 | 0.9501 | 0.0544 | Ting | 0.2161 | 0.1211 | 0.5082 | 0.5778 | 0.5746 | 0.0585 | Chung | 0.1280 | 0.0295 | 0.3170 | 0.4196 | 0.2278 | 0.3336 | Yeo | 0.2358 | 0.0480 | 0.7744 | 0.8168 | 0.7650 | 0.6831 | Ning | 0.1100 | 0.0388 | 0.3465 | 0.7432 | 0.3579 | 0.0073 | Ginhoux | 0.4094 | 0.0326 | 0.4189 | 0.5580 | 0.4777 | 0.0074 | Su | 0.3145 | 0.0676 | 0.4963 | 0.5951 | 0.3910 | 0.0201 | Usoskin | 0.1823 | 0.0363 | 0.4552 | 0.8334 | 0.6235 | 0.6579 | Deng | 0.7451 | 0.3860 | 0.6979 | 0.8977 | 0.7671 | 0.0334 | Fan | 0.2939 | 0.1910 | 0.4925 | 0.5874 | 0.5249 | 0.1417 | Goolam | 0.2826 | 0.1917 | 0.4464 | 0.7428 | 0.3282 | 0.0527 | Kolodz | 0.7024 | 0.0235 | 0.9634 | 1.0000 | 0.9790 | 0.0035 | Nestorowa | 0.3499 | 0.1983 | 0.3514 | 0.3774 | 0.3562 | 0.3795 | Treutlein | 0.2520 | 0.2585 | 0.4574 | 0.8074 | 0.5445 | 0.0754 | Camp15 | 0.4025 | 0.0596 | 0.5098 | 0.4945 | 0.4257 | 0.4979 | Camp17 | 0.6479 | 0.0735 | 0.7420 | 0.7344 | 0.7366 | 0.0117 | Yan | 0.7034 | 0.4988 | 0.7937 | 0.9480 | 0.8830 | 0.0872 | Wang | 0.0609 | 0.0613 | 0.2588 | 0.3038 | 0.2226 | 0.3274 | Li1 | 0.4852 | 0.0634 | 0.7377 | 0.7623 | 0.7168 | 0.0275 | Li2 | 0.2117 | 0.1807 | 0.3387 | 0.5915 | 0.3452 | 0.1425 | Patel | 0.1669 | 0.0429 | 0.6446 | 0.7436 | 0.7349 | 0.8248 | Pollen | 0.5846 | 0.1790 | 0.9272 | 0.9008 | 0.9055 | 0.8886 | Manno_m | 0.3084 | 0.0887 | 0.4026 | 0.3979 | 0.4065 | 0.4710 | Manno_h | 0.3796 | 0.6052 | 0.4867 | 0.4849 | 0.5287 | 0.5927 | Tasic | 0.6758 | 0.7707 | 0.7456 | 0.8458 | 0.8039 | 0.8180 | Zeisel | 0.4681 | 0.6586 | 0.7097 | 0.6076 | 0.5229 | 0.7391 | Grun | 0.0059 | 0.1145 | 0.4133 | 0.3729 | 0.0055 | 0.0005 | Baron | 0.2079 | 0.5731 | 0.5950 | 0.5480 | 0.4281 | 0.6618 | Muraro | 0.2930 | 0.6647 | 0.7001 | 0.6897 | 0.4189 | 0.0095 | Xin | 0.2587 | 0.4237 | 0.2422 | 0.7201 | 0.5445 | 0.0100 |
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