Microarray Detection Call Methodology as a Means to Identify and Compare Transcripts Expressed within Syncytial Cells from Soybean (Glycine max) Roots Undergoing Resistant and Susceptible Reactions to the Soybean Cyst Nematode (Heterodera glycines)
Table 6
Select genes that were unique to the 8 dpi syncytia undergoing a compatible reaction but that were not differentially expressed as compared directly to the 3 dpi compatible syncytium samples (Figure 8(j)) comprising the Disease and Defense, Signaling, and Transcription categories.
C-8 dpi as compared to C-3 dpi
Probe set ID
Public ID
Avg -value
Gene
Disease & defense
GmaAffx.8704.2.S1_at
BG042982
0.003021268
Peroxidase
Gma.8512.1.S1_at
AF236108.1
0.014307059
purple acid phosphatase
GmaAffx.93342.1.S1_s_at
CF809067
0.014526581
glutathione peroxidase 1
Gma.7301.1.S1_at
BM528250
0.019563038
GAMMA-GLUTAMYL TRANSPEPTIDASE 3 (GGT3)
GmaAffx.59573.1.S1_at
AW350986
0.019951841
purple acid phosphatase
Gma.13182.1.S1_at
CD392298
0.020669698
copper-binding protein (CUTA)
Gma.320.1.S1_at
AF019116.1
0.024040827
Peroxidase
Gma.11154.1.S1_a_at
AW309927
0.031457154
elicitor-responsive gene
Signal transduction
GmaAffx.21217.3.S1_at
AW569872
0.004392849
protein phosphatase 2C (PP2C)
Gma.4455.3.S1_at
CB063632
0.009290923
PROTEIN KINASE 2B (APK2B)
Gma.2407.1.S1_at
BI970419
0.009755834
putative protein kinase
Gma.5304.2.S1_at
CD410657
0.01212639
membrane-associated progesterone-binding protein 2 (ATMAPR2)
Gma.1007.1.S1_a_at
CD402215
0.015096504
calmodulin-related protein
Gma.2222.1.S1_at
CD416168
0.015413718
inositol monophosphatase
Gma.596.1.S1_at
AF228501.1
0.015413718
14-3-3-like protein
GmaAffx.67957.1.S1_at
BG157622
0.016772715
RhoGAP small G protein family protein
GmaAffx.73932.1.S1_s_at
BU550426
0.017952293
CTR1-like protein kinase
Gma.4487.2.S1_at
AW508329
0.020753499
calcium ion binding
GmaAffx.91867.1.S1_x_at
CF807592
0.028086024
14-3-3 protein
Gma.4629.1.A1_at
CA820195
0.028086024
SGT1
Gma.1518.2.S1_a_at
BM524684
0.030941813
cysteine protease
GmaAffx.19821.1.S1_at
CA782536
0.030941813
serine/threonine protein kinase
Transcription
GmaAffx.92861.1.S1_s_at
CF808586
0.002923594
HIGH MOBILITY GROUP B 1 (HMGB1)
Gma.3419.2.S1_at
BE658641
0.005201937
zinc finger, C2H2-type
Gma.6739.1.S1_s_at
AI856042
0.007667593
RNA polymerase II 15.9 (RPB15.9)
GmaAffx.41946.1.S1_at
BM528357
0.009290923
helix-loop-helix DNA-binding
GmaAffx.42667.1.S1_at
BU761164
0.011051366
SCARECROW-LIKE 1 (SCL1)
Gma.6476.2.S1_x_at
BQ453135
0.011324733
polynucleotidyl transferase
GmaAffx.30434.1.S1_at
BQ081227
0.011676724
helix-loop-helix DNA-binding
Gma.4975.1.S1_at
BI970178
0.011756578
zinc finger, CCCH-type- RING-type
Gma.6838.1.S1_at
AW349633
0.011756578
NIM1-like protein 1 (NPR-1)
GmaAffx.58899.1.S1_at
BI317760
0.016307345
C2-H2 zinc finger protein
Gma.16645.1.S1_at
BM143429
0.017952293
no apical meristem (NAM) protein (NAC2)
GmaAffx.65829.1.A1_at
CD392418
0.020669698
pathogenesis-related transcriptional factor and ERF
GmaAffx.53755.1.S1_at
BQ454195
0.022028694
BEL-like homeodomain protein 3
GmaAffx.73306.1.S1_at
BE658301
0.022040082
single-stranded nucleic acid binding R3H
GmaAffx.87860.1.S1_at
BU081275
0.023684433
MYB transcription factor
Gma.11345.1.S1_at
BE024036
0.025230236
MYB transcription factor (MYB92)
GmaAffx.90313.1.S1_s_at
CF806038
0.025685834
no apical meristem (NAM) protein NAC5
GmaAffx.73813.1.S1_at
BU551266
0.029056963
Arabidopsis NAC domain containing protein 104 (ANAC104/XND1)
