traG Gene Is Conserved across Mesorhizobium spp. Able to Nodulate the Same Host Plant and Expressed in Response to Root Exudates
Table 1
Rhizobia strains used in the present study.
Species
Strains/Isolates
Host plant
NCBI Accession number
JGI Bioproject ID NCBI Genome
nodD
nifA
traG
16S rRNA
Bradyrhizobium elkanii
WSM2783
Lotononis carinata
PRJNA163061
Bradyrhizobium elkanii
USDA94
Glycine max
PRJNA165317
Ensifer meliloti
5A14
Medicago sativa
PRJNA167593
Ensifer meliloti
C0438LL
Medicago sativa
PRJNA47287
Mesorhizobium australicum
WSM2073
Biserrula pelecinus
PRJNA47287
Mesorhizobium ciceri bv. biserrulae
WSM1271
Biserrula pelecinus
PRJNA48991
Mesorhizobium ciceri
CMG6
Cicer arietinum
PRJNA182744
Mesorhizobium ciceri
UPM-Ca7
Cicer arietinum
KT966794
KT966812
KT966830
DQ444456
NA
Mesorhizobium ciceri
WSM4083
Bituminaria bituminosa
PRJNA78191
Mesorhizobium ciceri
LMS-1
Cicer arietinum
KT966809
KT966811
KT966829
JQ033929
PRJNA507072
Mesorhizobium ciceri
CC1192
Cicer arietinum
PRJNA317272
Mesorhizobium japonicum
MAFF303099
Lotus spp.
PRJNA18
Mesorhizobium japonicum
R7A
Lotus spp.
PRJNA74389
Mesorhizobium loti
CJ3sym
Lotus spp.
PRJNA165305
Mesorhizobium loti
NZP2037
Lotus spp.
PRJNA81803
Mesorhizobium loti
R88b
Lotus spp.
PRJNA76961
Mesorhizobium mediterraneum
UPM-Ca36
Cicer arietinum
KT966810
KT966813
KT966831
L38825
NZ_NPKI00000000
Mesorhizobium metallidurans
STM 2683
Anthyllis vulneraria
PRJEB1501
Mesorhizobium muleiense
CGMCC 1.11022
Cicer arietinum
PRJNA329780
Mesorhizobium opportunistum
WSM2075
Biserrula pelecinus
PRJNA33861
Mesorhizobium sp.
29
Cicer arietinum
KT966796
KT966814
KT966832
AY225384
NA
Mesorhizobium sp.
64b
Cicer arietinum
KT966797
KT966815
KT966833
AY225385
NA
Mesorhizobium sp.
BR-15
Cicer arietinum
KT966798
KT966816
KT966834
EU652125
NA
Mesorhizobium sp.
EE-7
Cicer arietinum
KT966799
KT966817
KT966835
AY225397
NA
Mesorhizobium sp.
EE-12
Cicer arietinum
KT966800
KT966818
KT966836
AY225398
NA
Mesorhizobium sp.
G-55
Cicer arietinum
KT966801
KT966819
KT966837
EU652149
NA
Mesorhizobium sp.
PII-3
Cicer arietinum
KT966802
KT966820
KT966838
EU652106
NA
Mesorhizobium sp.
PMI-6
Cicer arietinum
KT966795
KT966821
KT966839
EU652121
NA
Mesorhizobium sp.
S-1
Cicer arietinum
KT966803
KT966822
KT966840
EU652169
NA
Mesorhizobium sp.
S-8
Cicer arietinum
KT966793
KT966823
KT966841
EU652116
NA
Mesorhizobium sp.
SL-9
Cicer arietinum
KT966804
KT966824
KT966842
JN191663
NA
Mesorhizobium sp.
ST-2
Cicer arietinum
KT966805
KT966825
KT966843
AY225401
NA
Mesorhizobium sp.
STR-2
Cicer arietinum
KT966806
KT966826
KT966844
EU652117
NA
Mesorhizobium sp.
STR-14
Cicer arietinum
KT966807
KT966827
KT966845
EU652118
NA
Mesorhizobium sp.
V-15b
Cicer arietinum
KT966808
KT966828
KT966846
EF504315
NA
Bioproject ID was retrieved from JGI database [24] and NCBI accession numbers for sequences resulting from this study are shown in bold. NA, not available.
