International Journal of Genomics

Research Article

Genome-Wide Identification, Phylogeny, and Expression Analysis of ARF Genes Involved in Vegetative Organs Development in Switchgrass

Table 1

The information of ARF family genes in switchgrass.


Gene name^a	Gene ID^b	ORF length (bp)^c	Deduced polypeptide^d			Number of intron^e	Chr^f	Chr locations^g
Gene name^a	Gene ID^b	ORF length (bp)^c	Length (aa)	MW (kDa)	pl	Number of intron^e	Chr^f	Chr locations^g

PvARF1	Pavir.Ca02838	2685	894	98.5	5.75	13	3a	47617320–47623645
PvARF2	Pavir.Cb00190	2136	711	78	6.02	7	3b	3249145–3252725
PvARF3	Pavir.Da00065	2739	912	100.8	5.92	13	4a	1765253–1771355
PvARF4	Pavir.Db00366	2781	926	102.1	5.81	13	4b	4362788–4368192
PvARF5	Pavir.Aa03303	2721	906	99.5	5.58	13	1a	67423915–67430303
PvARF6	Pavir.Ab00451	2715	904	99.5	5.54	13	1b	4856121–4861815
PvARF7	Pavir.Ga00205	2502	833	92.8	6.03	13	7a	3171190–3179787
PvARF8	Pavir.Gb00274	1992	663	73.7	5.33	11	7b	3192562–3,197923
PvARF9	Pavir.Da01885	1296	431	48.1	8.45	10	4a	42434950–42439045
PvARF10	Pavir.Db01975	2205	734	81	5.6	13	4b	43526790–43533795
PvARF11	Pavir.Fb01896	3282	1093	121.4	6.07	12	6b	48581098–48587963
PvARF12	Pavir.Fa00483	3255	1084	120.3	6.14	12	6a	7216236–7223377
PvARF13	Pavir.J00164	3549	1182	130.9	6.29	14	contig00149	16339–25992
PvARF14	Pavir.Db00232	3231	1076	120	6.28	11	4b	3367149–3373291
PvARF15	Pavir.J32718	3246	1081	120.5	6.08	11	contig39521	1–6360
PvARF16	Pavir.Ab00366	3174	1057	117.6	6.14	11	1b	4304985–4314018
PvARF17	Pavir.Gb00117	2829	942	104.3	5.81	12	7b	1282083–1288213
PvARF18	Pavir.Ga00157	2838	945	104.5	5.77	12	7a	2852206–2858929
PvARF19	Pavir.J03524	1554	517	56.3	6.24	2	contig04638	11091–14207
PvARF20	Pavir.J37640	1548	515	56	6.16	3	contig69503	1–2970
PvARF21	Pavir.Ia01695	2040	679	74.4	9.3	4	9a	20465406–20472448
PvARF22	Pavir.Ib03238	1374	457	50.1	6.33	2	9b	52838875–52843142
PvARF23	Pavir.Da00107	2061	686	74.9	7.04	2	4a	2050051–2053504
PvARF24	Pavir.J26437	2067	688	74.8	7.27	2	contig29414	2799–7192
PvARF25	Pavir.Aa01271	1836	611	65.4	9.52	3	1a	16431915–16436701
PvARF26	Pavir.J17862	1335	444	47.7	8.55	2	contig196091	4–1855
PvARF27	Pavir.Gb00635	1851	616	66.1	8.8	2	7b	7512630–7516588
PvARF28	Pavir.J24081	2118	705	75.7	7.35	2	contig263498	76–1753
PvARF29	Pavir.J08401	2214	737	80.5	7.15	10	contig11657	2523–8428
PvARF30	Pavir.Ca00928	1716	571	63.3	9.24	8	3a	10393086–10397991
PvARF31	Pavir.Eb02716	2133	710	78.5	6.18	9	5b	59020641–59026106
PvARF32	Pavir.J35323	1065	354	39.5	7.62	6	contig52555	409–3563
PvARF33	Pavir.J38128	1104	367	40.6	7.98	7	contig73490	486–4550
PvARF34	Pavir.J17623	732	243	27.4	8.97	5	contig193925	123–2287
PvARF35	Pavir.J17853	2214	737	79.7	7.82	9	contig19600	3358–9328
PvARF36	Pavir.Eb03157	2049	682	74.1	6.66	9	5b	65190090–65198384
PvARF37	Pavir.Cb00753	2202	733	82	6.26	11	3b	15971362–15976212
PvARF38	Pavir.Ca02218	1560	519	58	6.66	6	3a	36368836–36372762
PvARF39	Pavir.J22605	1143	380	43.1	9.3	7	contig24640	4150–7685
PvARF40	Pavir.Eb03734	2430	809	90.7	6.1	13	5b	71953597–71958902
PvARF41	Pavir.Ea03860	2433	810	90.8	6.05	13	5a	61521645–61526769
PvARF42	Pavir.Ea00026	2064	687	76.6	5.58	11	5a	658461–662814
PvARF43	Pavir.Eb00045	2064	687	76.7	5.62	11	5b	655839–660061
PvARF44	Pavir.Ab01961	1440	479	53.7	7.28	12	1b	38024228–38038833
PvARF45	Pavir.Aa01676	2136	711	79.3	5.88	12	1a	22183544–22188794
PvARF46	Pavir.Gb01617	1986	661	73.5	5.77	13	7b	21374440–21379797
PvARF47	Pavir.Ga01750	1923	640	71.1	6.35	12	7a	21881663–21886932

^aNames referred to the identified PvARF genes in switchgrass in this work. ^bThe alias of each ARF gene in iTAG 2.30 genome annotation. ^cLength of open reading frame in base pairs. ^dThe number of amino acids, molecular weight (kilodaltons), and isoelectric point of deduced polypeptide calculated by DNASTAR. ^eThe number of intron. ^f,gChromosome location from Phytozome (https://phytozome.jgi.doe.gov/).