The Complete Chloroplast Genome of Arabidopsis thaliana Isolated in Korea (Brassicaceae): An Investigation of Intraspecific Variations of the Chloroplast Genome of Korean A. thaliana

Table 2

List of genes containing SNPs and INDELs in 180404IB4 strain in A. thaliana.

No	Type	Genomic coordination	Gene name	Base changes	Amino acid changes
1	SNP	4,370	Intergenic space	T to A	-
2	SNP	5,705	Intron of rps16	C to A	-
3	SNP	5,943	Intron of rps16	G to A	-
4	SNP	8,502	Intergenic	T to A	-
5	SNP	12,673	Exon of atpF	G to A	Synonymous SNPs
6	SNP	14,825	Intergenic	T to A
7	SNP	16,380	Exon of rpoC2	G to C	C to S
8	SNP	17,801	Exon of rpoC2	T to C	Synonymous SNP
9	SNP	17,823	Exon of rpoC2	T to G	K to T
10	SNP	23,915	Exon of rpoB	T to G	Synonymous SNP
11	SNP	26,817	Exon of rpoB	G to C	Synonymous SNP
12	SNP	26,999	Intergenic	T to G
13	SNP	27,538	Intergenic	C to A
14	SNP	28,360	Intergenic	T to G
15	SNP	31,912	Intergenic	A to C
16	SNP	35,167	Intergenic	G to A
17	SNP	36,798	Intergenic	T to C
18	SNP	45,107	Intergenic	G to A
19	SNP	47,760	Intergenic	T to G
20	SNP	49,938	Intergenic	T to A
21	SNP	50,606	Intergenic	T to A
22	SNP	50,688	Intergenic	T to A
23	SNP	56,373	Exon of rbcL	C to T	Synonymous SNP
24	SNP	58,860	Intergenic	G to C
25	SNP	65,250	Intergenic	T to C
26	SNP	65,545	Intergenic	T to G
27	SNP	66,114	Intergenic	C to A
28	SNP	66,810	Intergenic	T to C
29	SNP	67,142	Intergenic	T to A
30	SNP	67,143	Intergenic	G to A
31	SNP	67,145	Intergenic	T to A
32	SNP	67,146	Intergenic	G to C
33	SNP	67,147	Intergenic	T to A
34	SNP	67,149	Intergenic	T to C
35	SNP	67,150	Intergenic	T to A
36	SNP	68,722	Exon of rpl20	T to C	Synonymous SNP
37	SNP	69,347	Intergenic	G to A
38	SNP	73,507	Exon of psbB	T to G	Synonymous SNP
39	SNP	75,386	Intergenic	G to A
40	SNP	77,830	Intergenic	G to A
41	SNP	80,688	Intergenic	T to G
42	SNP	91,824	Exon of ycf2	G to C	R to T
43	SNP	96,023	Intron of ndhB	T to G
44	SNP	111,048	Exon of ndhF	T to C	G to R
45	SNP	113,690	Intergenic	T to G
46	SNP	113,770	Intergenic	T to G
47	SNP	113,957	Intergenic	C to A
48	SNP	115,487	Intergenic	T to G
49	SNP	142,626	Intron of ndhB	T to G
50	SNP	146,825	Exon of ndhF	T to C	G to R
51	INDEL	92,548	Exon of ycf2	T to -	DN to -
52	INDEL	92,549	Exon of ycf2	G to -
53	INDEL	92,550	Exon of ycf2	A to -
54	INDEL	92,551	Exon of ycf2	T to -
55	INDEL	92,552	Exon of ycf2	A to -
56	INDEL	92,553	Exon of ycf2	A to -
57	INDEL	108,115	Intergenic	A to -
58	INDEL	130,525	Intergenic	T to -
59	INDEL	146,092	Exon of ycf2	A to -	DN to -
60	INDEL	146,093	Exon of ycf2	T to -
61	INDEL	146,094	Exon of ycf2	C to -
62	INDEL	146,095	Exon of ycf2	A to -
63	INDEL	146,096	Exon of ycf2	T to -
64	INDEL	146,097	Exon of ycf2	T to -