Research Article
The Role of the Exo-Xis Region in Oxidative Stress-Mediated Induction of Shiga Toxin-Converting Prophages
Table 3
Primers used for PCR.
| Primers for bacterial sequences | Primers for phage sequences | Name | Sequence (5′3′) | Name | Sequence (5′3′) |
| pF_recA | AGATTTCGACGATACGGCCC | pF_λ_int | TTTGATTTCAATTTTGTCCCACT | pR_recA | AACCATCTCTACCGGTTCGC | pR_ λ_int | ACCATGGCATCACAGTATCG | pF_lexA | ATGGATGGTGACTTGCTGGC | pF_λ_xis | TACCGCTGATTCGTGGAACA | pR_lexA | TTCGTCATCAATACGTGCGAC | pR_ λ_xis | GGGTTCGGGAATGCAGGATA | pF_ssb | ATCGAAGGTCAGCTGCGTAC | pF_λ_exo | TGCCGTCACTGCATAAACC | pR_ssb | CGACTTCTGTGGTGTAGCGA | pR_ λ_exo | TCTATCGCGACGAAAGTATGC | pF_recF | CGATACCGGCGCTATACTCC | pF_λ_cIII | ATTCTTTGGGACTCCTGGCTG | pR_recF | TTACGAACAGCTACGCCCG | pR_ λ_cIII | GTAAATTACGTGACGGATGGAAAC | pF_rpoD | GAATCTGAAATCGGGCGCAC | pF_λ_N | CTCGTGATTTCGGTTTGCGA | pR_rpoD | GTCAACAGTTCAACGGTGCC | pR_ λ_N | AAGCAGCAAATCCCCTGTTG | pF_rpoH | GCTTTGGTGGTCGCAACTTT | pF_λ_cI | ACCTCAAGCCAGAATGCAGA | pR_rpoH | TCGCCGTTCACTGGATCAAA | pR_ λ_cI | CCAAAGGTGATGCGGAGAGA | pF_rpoS | TTGCTCTGCGATCTCTTCCG | pF_λ_cro | ATGCGGAAGAGGTAAAGCCC | pR_rpoS | GAACGTTTACCTGCGAACCG | pR_ λ_cro | TGGAATGTGTAAGAGCGGGG | pF_uvrA | GTCCATATCCGCCACTACCG | pF_λ_cII | TCGCAATGCTTGGAACTGAGA | pR_uvrA | TTACCCAACGTCTTGCCGAG | pR_ λ_cII | CCCTCTTCCACCTGCTGATC | pF_ftsK | ACAAACCGTTTATCTGCGCG | pF_λ_O | AATTCTGGCGAATCCTCTGA | pR_ftsK | ATCTTTACCCAGCACCACGG | pR_ λ_O | GAATTGCATCCGGTTT | pF_16SrRNA | CCTTACGACCAGGGCTACAC | pF_λ_Q | TTCTGCGGTAAGCACGAAC | pR_16SrRNA | TTATGAGGTCCGCTTGCTCT | pR_ λ_Q | TGCATCAGATAGTTGATAGCCTTT | | | pF_λ_R | ATCGACCGTTGCAGCAATA | | | pR_ λ_R | GCTCGAACTGACCATAACCAG | | | pF_Φ_int | CAGTTGCCGGTATCCCTGT | | | pR_ Φ_int | TGAGGCTTTCTTGCTTGTCA | | | pF_Φ_xis | TATCGCGCCGGATGAGTAAG | | | pR_ Φ_xis | CGCACAGCTTTGTATAATTTGCG | | | pF_Φ_exo | TGCCGTCACTGCATAAACC | | | pR_ Φ_exo | TCTATCGCGACGAAAGTATGC | | | pF_Φ_cIII | ATTCTTTGGGACTCCTGGCTG | | | pR_ Φ_cIII | GTAAATTACGTGACGGATGGAAAC | | | pF_Φ_N | AGGCGTTTCGTGAGTACCTT | pR_ Φ_N | TTACACCGCCCTACTCTAAGC | | | pF_Φ_cI | TGCTGTCTCCTTTCACACGA | | | pR_ Φ_cI | GCGATGGGTGGCTCAAAATT | | | pF_Φ_cro | CGAAGGCTTGTGGAGTTAGC | | | pR_ Φ_cro | GTCTTAGGGAGGAAGCCGTT | | | pF_Φ_cII | TGATCGCGCAGAAACTGATTTAC | | | pR_ Φ_cII | GACAGCCAATCATCTTTGCCA | | | pF_Φ_O | AAGCGAGTTTGCCACGAT | | | pR_ Φ_O | GAACCCGAACTGCTTACCG | | | pF_Φ_Q | GGGAGTGAGGCTTGAGATGG | | | pR_ Φ_Q | TACAGAGGTTCTCCCTCCCG | | | pF_Φ_R | GGGTGGATGGTAAGCCTGT | | | pR_ Φ_R | TAACCCGGTCGCATTTTTC |
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