Prevalence, Antibiotic Susceptibility Profile, and Associated Risk Factors of <i>Salmonella</i> Isolate among Diarrheal Patients Visiting Dessie Referral Hospital, Northeast Ethiopia

Teferi, Samuel Chane

doi:https://doi.org/10.1155/2020/8834107

International Journal of Microbiology

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Abstract Introduction Materials and Methods Results and Discussion Conclusion Data Availability Conflicts of Interest Acknowledgments References Copyright Related Articles

Research Article | Open Access

Volume 2020 | Article ID 8834107 | https://doi.org/10.1155/2020/8834107

Prevalence, Antibiotic Susceptibility Profile, and Associated Risk Factors of Salmonella Isolate among Diarrheal Patients Visiting Dessie Referral Hospital, Northeast Ethiopia

Samuel Chane Teferi¹

Academic Editor: Luigi Santacroce

Received15 Aug 2020

Revised10 Sept 2020

Accepted07 Oct 2020

Published22 Oct 2020

Abstract

Salmonellosis remains an important public health problem worldwide, particularly in the developing countries such as Ethiopia. A cross-sectional study was conducted to determine the prevalence, antibiotic susceptibility profile, and associated risk factors of Salmonella isolate among diarrheal patients who were visiting Dessie Referral Hospital, Dessie, Northeast Ethiopia, from November 2016 to January 2017. 384 stool samples were collected using sterile stool cups. Out of these, 20 (5.21%) were found to be positive for Salmonella species. The distribution of positive samples among the three age groups indicated that Salmonella species were predominantly prevalent in the age group of three months (0.25 years) to 4 years old patients. Abdominal pain, vomiting, watery consistency of stool, and 1–5 days of diarrhea were the clinical features that were significantly associated with salmonellosis. Eating raw vegetables and fruits, consumption of street-vended foods, cohabitation of animals, using water from the unprotected source, absence of latrine, and consumption of raw products of animals such as eggs and raw milk were the risk factors that were significantly associated with the prevalence of Salmonella species. The antibiotic sensitivity test was performed for the isolated Salmonella species against 5 currently recommended antibiotics. The antimicrobial sensitivity study carried out using the Kirby–Bauer disk diffusion method showed that 100% of Salmonella isolates were sensitive to ciprofloxacin and 80% sensitive to nalidixic acid, respectively. Among them, twenty isolated Salmonella species resistant to ampicillin, tetracycline, and trimethoprim-sulfamethoxazole were 100%, 85%, and 80%, respectively. This study revealed that Salmonella species were prevalent among diarrheal patients who were visiting Dessie Referral Hospital, and therefore, routine diagnosis of patients with diarrhea cases is required, and drugs must be prescribed after performing the sensitivity test, or checking the updated information on the local antibiotics pattern is always necessary.

1. Introduction

Diarrhea is a condition of having three or more loose or liquid bowel movement per day [1]. Human diarrheal diseases have been recognized since the beginning of civilization and remain one of the most prevalent public health problems of today. Diarrheal infection spreads through the ingestion of contaminated food or drinking water or person to person contact as a result of poor hygiene. According to [1], diarrheal disease is the second leading cause of death in children under five years old. Each year diarrhea kills around 525,000 under-five children. 12% from the estimated 3.6 million child deaths in 2010 were attributed to diarrheal diseases. The incidence of childhood diarrhea in Africa has also decreased from 4.2 to 3.3 episodes per child-year from 1990 to 2010, but sub-Saharan Africa still accounts for one-third of diarrheal episodes yearly (500 million of 1.7 billion worldwide), with the highest incidence among children of 6–11 months of age [2]. In Ethiopia, as in other sub-Saharan African countries, morbidity from diarrheal diseases is a serious health problem, and according to [3], Salmonella was one of the major causes of diarrhea in humans. Diarrhea in children is the second leading top ten causes of death that accounted 8% in Ethiopia [4].

Diarrhea can be caused by a wide variety of bacterial, viral, and protozoan pathogens. The most important of these are Salmonella spp, Shigella spp, Vibrio cholera, Entamoeba histolytica, Norovirus, Giardia lamblia, Escherichia coli, Campylobacter jejuni, Cryptosporidium sp., and Rotavirus [5].

Salmonellosis, the disease caused by Salmonella, is one of the most frequently occurring foodborne diseases worldwide [6]. As a result, it continues to be a major health burden worldwide. In Ethiopia, 10.5% Salmonella prevalence was reported in Butajira [7], 6.2% Salmonella prevalence was reported in Jimma Health Center [8], a prevalence of 14.6% Salmonella infection was reported in Harar among patients who were admitted to hospital [9], 3.95% Salmonella infection was reported in children of Addis Ababa [10], and 2.5% was reported in Hawassa [11].

The majority of Salmonella cases occur as the result of ingesting contaminated food or water, but it can also be transmitted from person to person via the oral-fecal route. Salmonella can also be acquired by contact with domestic animals and their food products, farm animals or animals in petting zoo, and exotic pets such as turtles, hedgehogs, and iguanas [12].

A study in Ethiopia indicated that there is an increase in antimicrobial resistant in pathogenic bacteria causing diarrheal disease because of easy affordability of antibiotics in pharmacies and misuse [3, 13]. Therefore, antimicrobial resistance in bacterial pathogens causing diarrheal diseases makes it difficult to treat patients. In Dessie town, particularly the rural area of Dessie, there are a number of risk factors, which lead to gastrointestinal infections. For example, poor sanitary conditions, cattle living together with people, drinking raw milk and eating raw meat, and consumption of street-vended foods are common practices. These factors are directly or indirectly related to consumption of water and foods. According to [12], contaminated water and foods are responsible for initiating salmonellosis. So, the objective of this study was to investigate the prevalence, antibiotic susceptibility profile, and associated risk factors of Salmonella among diarrheal patients visiting Dessie Referral Hospital, Dessie town, Northeast Ethiopia.

2. Materials and Methods

2.1. Study Design

A cross-sectional study was carried out from November 2016 to January 2017 on diarrheal patients visiting Dessie Referral Hospital, Dessie. A pretested structured questionnaire was administered to patients or to their parents or guardians to collect information on sociodemographic and risk factors including sex, age, educational status, place of residence, source of drinking water, latrine usage, personal hygiene practice, and clinical features of the study subjects.

2.2. Study Population

The study included all diarrheal patients visiting the outpatient department of Dessie Referral Hospital. The sample size (n) was determined through a single proportion formula by taking an estimated prevalence of 0.5, since there is no previous investigation on the same title in the study area and margin of error 0.05. Sample size was determined using the following formula [14].where n is the number of sample size. is the standard score corresponding to 95% confidence level, i.e., 1.96. is the prevalence of Salmonella. D is the marginal of error between the sample and the population. So, the calculated sample size for this study was 384.

2.3. Sampling Method

The sources of population were all diarrheal patients attending Dessie Referral Hospital. Those patients who had diarrhea and included in the sample were coded and assisted supervised by physicians or nurses in the outpatient department to fill the structured questionnaires. Then, fresh stool specimens were collected from diarrheal cases at Dessie Referral Hospital and transported using sterile stool cups to Dessie Regional Laboratory for analysis.

2.4. Isolation and Identification of Salmonella Species

About 1 g of stool sample was added into a tube containing selenite F broth. Selenite broth was incubated aerobically at 37°C for 18 hours [15]. For ideal isolation of Salmonella, two different selective media, general purpose medium with low sensitivity MacConkey agar and a high selective xylose-lysine desoxycholate agar (Oxoid, England), were used. A loopful of faecal suspension from enrichment media or selenite broth was subcultured on xylose-lysine desoxycholate agar and MacConkey agar. Then, plates were incubated aerobically at 35–37°C for 18–24 hours. Typical colorless colonies on MacConkey agar and colonies with a black center and a lightly transparent zone of reddish color due to the color change of the indicator were picked, and a series of biochemical tests were performed for further identification [15]. Those are the urease test (HiMedia, India), triple sugar iron agar (TSI) test (HiMedia, India), lysine iron agar (LIA) test (Oxoid, England), motility test (Oxoid, England), indole test (Oxoid, England), and citrate utilization test (Oxoid, England).

2.5. Antimicrobial Susceptibility Test

The antibiotic susceptibility profile of Salmonella isolates was determined for the commonly used antibiotics (Oxoid Ltd., Basingstoke, England). Each isolate was tested for the selected antimicrobial agents with their respective concentrations such as ampicillin (10 μg), tetracycline (30 μg), trimethoprim-sulfamethoxazole (1.25/23.75 μg), nalidixic acid (30 μg), and ciprofloxacin (100 μg). Using a sterile wire loop, 3–5 well isolated colonies were picked and emulsified in 5 ml nutrient broth. The prepared turbidity was matched with a turbidity standard (0.5 McFarland) to have an equivalent suspension. A sterile swab was used to inoculate the suspension by streaking on the prepared and dried Mueller–Hinton agar plate evenly. It was then allowed to stay for 3–5 minutes. Sterile forceps were used to place the antimicrobial discs on the inoculated plates [16].

Within 30 minutes after applying the disc, the plates were incubated at 35°C for 16–18 hours. After incubation, diameters of the zone of inhibition was measured to the nearest millimeter using a metallic caliper, and the isolates were classified as sensitive, intermediate, and resistant according to the standardized table provided by [16]. The standard reference strain, Escherichia coli (American type culture collection 25922), was used as a control for the study.

2.6. Data Analysis

The data were entered and analyzed using the Statistical Package for Social Sciences (SPSS) version 16 software. The prevalence of Salmonella species was calculated as percentage, and results are presented in tables. Statistical significance of the association was measured by using the chi-square test (association between selected risk factors and Salmonella infection). values less than 0.05 were considered as statistically significant.

2.7. Ethical Considerations

Institutional consent was acquired through communications made with Dessie Referral Hospital before conducting the study. The medical director of Dessie Referral Hospital was briefed first about the study before meeting with patients. Both oral and written informed consents were obtained from the parents or guardians of the study subjects before administration of the study. The participation of patients in this study was purely a voluntary activity, and their right not to participate was respected. Issues of confidentiality and anonymity were also maintained.

3. Results and Discussion

Three hundred eighty-four (n = 384) diarrheal patients attending the outpatient department of Dessie Referral Hospital were examined for Salmonella spp during the three-month study period. Distribution of the study participants by sex and age is shown in Table 1. Age group category was based on the Dessie Regional Health Bureau data record system on diarrheal diseases prevalence, where 0–4, 4–14, and ≥15 age groups are reported as under-five children, young children, and adults, respectively.

Highest frequency of diarrheal diseases occurred in the age group of 3 months to four years (Table 1). This was consistent with [2] who reported a highest incidence among children of 6–11 months of age.

3.1. Prevalence of Salmonella Species

The prevalence of Salmonella isolates in stool samples of this study, 5.21% (20/384), is comparable to the findings of previous studies made in China by [17] who reported a prevalence of 5.8% and 4.8% Salmonella in the years 2006 and 2007, respectively, and 5.3% a study performed at Jimma and Addis Ababa, Ethiopia [13].

On the other hand, a lower prevalence was reported by [18] from Djibouti who reported a prevalence rate of 2.9% and 3.3% from Lagos, Nigeria [19], 3% Botswana [20], and 1.08% [21], 2.5% [11], and 3.95% [10] from Ethiopia. However, the isolation rate in this study was found to be lower than the 6.2% Salmonella prevalence reported by [8], a study conducted on the prevalence of intestinal parasite, Shigella and Salmonella species among diarrheal children in Jimma health center, Jimma, southwest Ethiopia, and much lower than the 10.5% and 14.6%, 16.7%, and 17% prevalence of Salmonella reported by [7, 9, 22, 23] in Ethiopia, Mexico, and Nigeria, respectively.

The prevalence of Salmonella infection by age and sex in the present study is also shown in Table 1. As can be seen from the table, Salmonella infection was seen in both male and female patients, but it was statically insignificant with 0.800 of the chi-square value and value of 0.371. This implies that both sexes are equally at risk of Salmonella infection. Among the 20 patients infected with Salmonella species, 12 (60%) were females and 8 (40%) were males, which gave an overall male to female ratio of 1:1.5.

As indicated in Table 1, Salmonella were isolated in all age groups, and a statistically significant difference existed between the prevalence of the different age groups (). Out of 20 positive Salmonella isolates, more Salmonella infection (12/20 or 60%) was observed in children of 0–4 years of age than in those young children aged between 5 and 14 years (30%) and adults above 15 years (10%).

3.2. Association of Salmonella Infection and Identified Risk Factors

The association of Salmonella infection and prevalence of Salmonella spp. are shown in Table 2. The data generally show that infection with Salmonella spp. is associated significantly with the absence of latrine (X² = 7.200, ), drinking unprotected water (X² = 5.000, ), consumption of egg (X² = 5.000, ), cohabitation with domestic animals (X² = 7.200, ), consumption of raw milk (X² = 9.800, ), consumption of raw vegetables and fruits (X² = 16.200, ), and consumption of street-vended foods (X² = 12.800, ).

In this study, there was a significant link between the absence of latrine and infection with Salmonella. Contracting salmonellosis and poor living and housing conditions was significantly associated. This finding was typical to the situation, throughout the developing world [24].

Association of drinking from the unprotected water source and prevalence of salmonellosis (X² = 5.000 and ) was significant. From 20/384 positive cases for salmonellosis, those who used protected water had less risk of contracting salmonellosis than those who used from the unprotected source (Table 2). This can be due to the high level of contamination of water by Salmonella from the environment. The finding was in line with [25] who reported that the transmission of Salmonella typhi in humans was associated with the ingestion of contaminated water. Moreover, a study has shown that exposure to contaminated water is known to be associated with diarrhea caused by ingestion of microorganisms [26].

Salmonella spp. infection was shown to be significantly associated with those who had domestic animals (cohabitation); the present finding was in line with [9] from Harar, Ethiopia. This finding suggests the fact that Salmonella spp. are important human and animal pathogens and acquired from contact with domestic animal and their food products [12]. Besides, the aquatic environment is liable to contamination through colistin-treated animal faeces via the use of manures in feeding farmed fish [27].

Raw milk and raw milk products consumption from a dairy may result in infection by Salmonella and many other pathogenic bacteria [28]. The present finding also revealed a significant association between raw milk consumption and contracting of Salmonella infection. This is comparable to the findings in Pennsylvania who reported the transmission of enteric pathogen infections to humans via the consumption of raw milk [29].

In the present study, an association between salmonellosis and consumption of raw vegetables and fruits from unhygienic sources were significant (Table 2). In recent years, fresh produce such as fruits and vegetables have gained concern as vehicles of transmission where contamination can occur at multiple steps along the food chain [30].

The prevalence of Salmonella spp. was also associated with the consumption of street-vended foods, which was consistent with a report from Ghana by [9, 31] from Harar, Ethiopia. This might be due to street-vended foods sold under unhygienic conditions in the study area. Salmonella has been known as the most important foodborne pathogen, which can infect humans via consuming contaminated food [32]. Moreover, identifying genetic subpopulations and understanding their epidemiology may contribute to efforts invested in the prevention and mitigation of these important foodborne pathogens [33].

According to [34], consumption of contaminated products such as meat and eggs initiate salmonellosis in human. In the present study, a significant association (X² = 5.000, ) was found between consumption of raw eggs and Salmonella infection. Those patients who consumed raw egg were likely contracting salmonellosis than those who did not consume such products. Moreover, according to [35], human and poultry isolates bore more antimicrobial resistance and virulence genes, and the meat pathway may be an important source of human infection by some clades of Salmonella enteritidis ST11 in East Africa, and according to [36], the emergence and spread of new strains of zoonotic bacteria, such as multidrug resistant (MDR) Salmonella infantis, represent a growing health risk for humans in and outside Europe due to foodborne infections of poultry meat origin.

There was no statistically significant association between residence, educational status, presence of domestic animal, and raw meat on one hand and infection with Salmonella on the other hand as indicated in Table 2.

3.3. Association between the Prevalence of Salmonella spp. and Clinical Features

Association between the prevalence of Salmonella spp. and clinical features are summarized in Table 3. In this study, out of twenty Salmonella-positive patients, the majority had abdominal pain followed by vomiting and fever, which accounted for 90%, 80%, and 70% of the patients, respectively. This result was comparable with the study conducted in Harar by [9] who reported 85.7% abdominal pain and [11] showed 50% abdominal pain. There was a significant association between abdominal pain, vomiting, and Salmonella infection (X² = 12.800, 7.200 and , respectively), whereas there was no significant association in fever (Table 3).

The present study showed that there was a significant association between consistency of stools, duration of diarrhea, and positivity of Salmonella infection (X² = 13.600, 7.600 and , respectively) as the majority 60% (12) of the stool samples were watery diarrhea in contrast to [37] in Harar who reported that no Salmonella was isolated from watery diarrhea. But the present study is comparable with [9], a study performed in Harar who reported 28.6% watery diarrhea, and 82.4% Salmonella was isolated from watery diarrhea in a study performed in Addis Ababa [38].

The remaining 20% (4), 10% (2), and 10% (2) of the isolated stool samples were mucoid, bloody, and mixed (blood and mucus), respectively (Table 3). This may reflect the underlying variation in signs and symptoms with strain differences from place to place.

Out of the twenty isolates, 12 (60%) were having 1–5 days duration of diarrhea, which is consistent with [11] who reported 75% and [9] who reported 71.4% of the isolate was from 1 to 5 days. Whereas the remaining 30% and 10% of Salmonella isolate were 6–10 and 11–15 days of diarrhea, respectively. The use of clinical signs and symptoms is therefore very important in helping to identify patients with salmonellosis.

3.4. Antimicrobial Susceptibility Test

The antimicrobial susceptibility tests were performed on all Salmonella isolates using the disk diffusion method, and the results are presented in Table 4. Among 20 Salmonella isolates, 20 (100%), 17 (85%), 16 (80%), and 3 (15%) were resistance to ampicillin, tetracycline, trimethoprim-sulphamethoxazole, and nalidixic acid, respectively. But all Salmonella isolates showed 100% susceptibility to ciprofloxacin.

3 (15%), 2 (10%), and 1 (5%) of the isolate showed an intermediate resistance to tetracycline, trimethoprim-sulfamethoxazole, and nalidixic acid, respectively. Even though most of the isolate showed different resistance patterns, 16 (80%) and 2 (10%) tested isolates were susceptible to nalidixic acid and trimethoprim-sulfamethoxazole, respectively. The antimicrobial resistance in Salmonella is one of the main concerns of its infection in humans [32].

As can be seen from Table 4, Salmonella were resistance to ampicillin (100%), tetracycline (85%), and trimethoprim-sulfamethoxazole (80%), which was comparable to the findings in Harar (100%, 100%, and 85.7%, respectively) as reported by [9] and 100% and 86.8% resistant to ampicillin and trimethoprim-sulfamethoxazole as reported by [39] in Pakistan. Moreover, a study from Addis Ababa reported that 81.2%, 94.5%, and 75.7% of the isolate was resistant to ampicillin, tetracycline, and trimethoprim-sulfamethoxazole, respectively [38]. In contrast to the present study, all were found to be susceptible to ampicillin, tetracycline, and trimethoprim-sulfamethoxazole in a study at Hawassa by [11].

The present finding was higher than the previous studies reported by [7], which showed that a high frequency of resistance in Salmonella isolates was observed to tetracycline (52.5%), cotrimoxazole (37.5%), and ampicillin (60%). Moreover, 80% of the isolate had resistance to ampicillin according to [10]. The rate of resistance of Salmonella isolates to tetracycline in present study (85%) was higher than in Harar (71.4%) [37] and in Mozambique (15%) [40].

Resistance to ampicillin and trimethoprim-sulfamethoxazole in the present study was also higher than those reported from Brazil, where only 88.8% and 56.8% were found to be resistant, respectively [39]. But 86.4% resistant to tetracycline is comparable with the present study.

The increased resistance towards ampicillin (100%), tetracycline (85%), and trimethoprim-sulfamethoxazole (80%) in this study might be due to misuse of those antibiotics in the study area. It was revealed that antibiotic resistance of Salmonella isolates from diarrheic children in Southeastern Africa was conferred by TEM-like β-lactamases for ampicillin, floR genes, and CAT activity for chloramphenicol, tetA genes for tetracycline, and dfrA1 genes for trimethoprim-sulfamethoxazole/cotrimoxazole [40].

In the present study, 100% and 80% of Salmonella isolates were shown to be susceptible to ciprofloxacin and nalidixic acid, respectively, and they can be used to treat salmonellosis in the study area. The present finding was in line with a study conducted in Harar by [9].

Table 5 shows findings from different regions and periods, such as central Ethiopia (Addis Ababa), Southern Ethiopia (Butajira), southwest Ethiopia (Jimma), Eastern Ethiopia (Harar), and Dessie (the present study). The data revealed that the highest percentages of ampicillin and tetracycline resistant Salmonella isolates were reported from Harar (100% each), Addis Ababa (81.3% and 94.5%) in 2008, and Dessie (100% and 85%). Similarly, an increased resistance of trimethoprim-sulphamethoxazole was documented in Jimma and Addis Ababa [13], Dessie (the present study), and Addis Ababa [38], where 80.5%, 80%, and 75.7% have been shown to be resistant to this antibiotic, respectively. Resistance against trimethoprim-sulfamethoxazole and tetracycline was reported from Jimma [3] and Jimma and Addis Ababa [13] where 40.7% and 39.8%, respectively, were found to be resistant to those antibiotics.

4. Conclusion

The result of the present study showed that the prevalence of salmonellosis among diarrheal patients who visited Dessie Referral Hospital, Dessie, Northeast Ethiopia, from November to January 2017 was 5.21%. This prevalence rate of Salmonella species is associated with drinking unprotected water, consumption of raw vegetable and fruits, consumption of raw meat, and absence of latrine in the households. Relatively, its prevalence was lower for those study subjects that had safe and adequate drinking water and proper excreta disposal systems.

Prevention of salmonellosis depends primarily on measures that prevent the spread of the organism in the community and prevent the spread from person to person through washing hand with soap after toilet, by drinking protected water, and proper handling of foods. These measures are not only used for salmonellosis but are also used for other diarrheal diseases. In nutshell, creating awareness about transmission and risk factors of Salmonella is necessary.

In this study, 100% of the isolate was susceptible to ciprofloxacin, so it may be used for the treatment of salmonellosis. Besides, tetracycline, ampicillin, and cotrimoxazole should not be used for the treatment of Salmonella infection unless culture and sensitivity tests are performed prior to treatment.

5. Recommendations

The following recommendations are made based on the finding: The present study did not differentiate Salmonella isolate into the species level. Therefore, further studies that aim to differentiate serogroups and serotypes of Salmonella are needed. The present study was conducted in a short period of time from November to January 2017. Additional study is needed to assess the seasonal variation in prevalence and antimicrobial resistance patterns of Salmonella species. Raw eggs, raw vegetables and fruit, and milk should not be consumed in order to limit the spread of salmonellosis Pretreatment of water obtained from unprotected sources prior to consumption, the need to improve the hygienic conditions of street vended foods, and reduce and remove too many contact (living with animals) in order to limit the spread of salmonellosis

Data Availability

The dataset used to support the findings of this study is available from the author upon request.

Conflicts of Interest

The author declares that there are no conflicts of interest.

Acknowledgments

The author acknowledges the support provided by Minister of Education of Ethiopia to accomplish this study. The study participants are duly acknowledged for voluntarily supplying the stool sample and responding to the questionnaire. The author expressed his gratitude to data collectors and supervisors for their cooperation.

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Copyright © 2020 Samuel Chane Teferi. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

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