| Properties | EC number | Molar mass range (kDa) | pH optimum | Temperature optimum | Metal requirement(s) | Active amino acid(s) | Major inhibitor(s) | Major sources |
| Aspartyl or carboxyl protease | 3.4.23 | 30–45 | 3–5 | 40–55 | Ca2+ | Aspartate or cysteine | Pepstatin | Aspergillus, Mucor, Endothia, Rhizopus, Pencillium, Neurospora, animal tissue (stomach) |
| Cysteine or thiol protease | 3.4.22 | 34–35 | 2–3 | 40–55 | — | Aspartate or cysteine | Iodoacetamide, p-CMB | Aspergillus, stem of pineapple (Ananas comosus), latex of fig tree (Ficus sp), papaya (Carica papaya), Streptococcus, Clostridium |
| Metalloprotease | 3.4.24 | 19–37 | 5–7 | 65–85 | Zn2+, Ca2+ | Phenylalanine or leucine | Chelating agents such as EDTA and EGTA | Bacillus, Aspergillus, Pencillium, Pseudomonas, Streptomyces |
| Serine protease | 3.4.21 | 18–35 | 6–11 | 50–70 | Ca2+ | Serine, histidine, and aspartate | PMSF, DIFP, EDTA, soybean trypsin inhibitor, phosphate buffers, indole, phenol, and triamino acetic acid | Bacillus, Aspergillus, animal tissue (gut), Tritirachium album (thermostable) |
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